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Genotype-Phenotype Databases

These databases archive or display correlative or association results between expression levels or genetic variants with phenotypes (e.g. drug toxicity, traits, disease, metabolites levels).

AACR Project GENIE

Aggregates existing and ongoing next-generation clinical sequencing data and associated pathology reports from multiple cancer centers in the U.S., Canada, and Europe into a single, searchable "clinical cancer genomics meta-database"

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Attie Lab Diabetes Database

Allows to search gene expression in key tissues of the mice as function of phenotypes relevant to diabetes traits

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CellMiner

Access to drug sensitivity data (e.g. IC50 for cytotoxicity) and the genomic datasets (e.g. genes expression levels) of cancer cell lines

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Circadian Expression Profiles Data Base (CircaDB)

Allows to search genes responsible for the physiologies and pathologies associated with circadian rhythms

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FinnGen

Public release of the FinnGen data freeze 3 results and summary statistics

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ClinGen

Allows to search genes and diseases to learn about clinical annotation and interpretation of the genomic variants

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ClinVar

Allows to search genes and diseases to find relationships among human variations and phenotypes, with supporting evidence

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European Genome-phenome Archive

This is the European Genotype–phenotype Archive public databases to submit and explore human phenotype and genotype data which require authorized-access

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Genomics of Drug Sensitivity in Cancer

Access to drug sensitivity data (e.g. IC50 for cytotoxicity) and the genomic datasets (e.g. genes expression levels) of cancer cell lines

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Gene ATLAS (UKBiobank)

This is a large database of associations between hundreds of traits and millions of variants using the UK Biobank cohort

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Genomic Data Commons (GDC) Data Portal

Provides the cancer research community with a unified data repository that enables data sharing across cancer genomic studies in support of precision medicine

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GWAS Central

Search for published genetic association studies for SNP-trait associations

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GRASP: Genome-wide Repository of Associations Between SNPs and Phenotypes

Access to all available genetic association results from papers, their supplements and web-based content

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GWAS Catalog

Search and download published genetic association studies for SNP-trait associations

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Human Plasma Proteome GWAS

A Table of all published GWAS with proteomics

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pGWAS server

Search for SNP-trait association with protein levels

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International Mouse Phenotyping Consortium (IMPC)

Search for knockout mice and its associated phenotype

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Metabolomics GWAS Server

Search for association results of genome-wide association studies on the human metabolome

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Japanese ENcyclopedia of GEnetic associations by Riken

This site provides summary statistics files of the GWAS using Japanese (mainly) subjects from BioBank Japan and other cohorts in Japan

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National Bioscience Database Center (NBDC)

This is the Japanese Genotype–phenotype Archive (JGA) public databases to submit and explore human phenotype and genotype data which require authorized-access

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Oxford Brain Imaging Genetics (BIG) Server

The genetic basis of human brain structure and function - GWAS analysis of multimodal brain imaging phenotypes from UK Biobank participants (https://doi.org/10.1101/178806)

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Online Mendelian Inheritance in Man® (OMIM)

A comprehensive, authoritative compendium of human genes and genetic phenotypes, including information on all known mendelian disorders and over 15,000 genes

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PheWas Resources

Phenome-wide association studies (PheWAS) analyze many phenotypes compared to a single genetic variant (or other attribute).

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Pan-UK Biobank

The UK Biobank is a collection of a half million individuals with paired genetic and phenotype information that has been enormously valuable in studies of genetic etiology for common diseases and traits.

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Pi Pipeline

Accelerates drug target selection for immune disease traits

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SNiPA

SNiPA offers both functional annotations and linkage disequilibrium information for bi-allelic genomic variants (SNPs and SNVs)

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Type 2 Diabetes Genetics

This portal enables browsing, searching, and analysis of human genetic information linked to type 2 diabetes and related traits

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The Human Cytochrome P450 (CYP) Allele Nomenclature Database

Allele nomenclature for Cytochrome P450 enzymes

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The Database of Genotypes and Phenotypes (dbGAP)

This database archive and distribute data and results from studies that have investigated the interaction of genotype and phenotype in humans

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UK Biobank GWAS Results

Link to download the UK Biobank GWAS Results

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PharmGKB

PharmGKB is a comprehensive resource that curates knowledge about the impact of genetic
variation on drug response for clinicians and researchers.

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