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‚ÄčExpression Databases:

These databases archive or display results on mRNA or protein levels in cancer cell lines, normal or cancer tissues.

Allen Brain Atlases and Data

Excellent resource and data to accelerate progress toward understanding the brain

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Evo-devo mammalian organs

Interactive exploration of individual gene expression profiles across organs, developmental stages and species

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Expression Atlas

An open science resource to find information about gene and protein expression across species and biological conditions such as different tissues, cell types, developmental stages and diseases among others

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GEO DataSets

This database stores curated gene expression DataSets, as well as original Series and Platform records in the Gene Expression Omnibus (GEO) repository

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Catalog of gene to phenome associations

A catalog of associations by applying a framework to 44 GTEx tissues and 100+ phenotypes from GWA summary statistics to capture the effects of gene expression variation on human phenotypes. 

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Human Cell Atlas Bone Marrow

A comprehensive web portal to navigate data from initial Human Cell Atlas data production for over 100,000 human bone marrow cells spanning eight individual donors

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MetaSignature

Combine of all microarray studies to gain novel insights into the factors driving disease

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RNA-seq Analysis of Microdissected Rat Kidney Tubule Segments

Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes (PMID: 25817355)

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BioGPS Gene Portal System

Gene annotation portal for learning about gene and protein function and expression

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Database of Immune Cell (DICE)

hese datasets reveal the effects of disease risk-associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis

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Gene Expression across Normal and Tumor tissue (GENT)

Provides gene expression patterns across diverse human cancer and normal tissues

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GTEx Portal

Correlations between genotype and tissue-specific gene expression levels

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Geuvadis RNA sequencing project

RNA sequencing project of 1000 Genomes samples (LCL)

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Human Brain Atlas

Gene expression along entire development and adulthood in the cerebellar cortex (CBC), mediodorsal nucleus of the thalamus (MD), striatum (STR), amygdala (AMY), hippocampus (HIP) and 11 areas of neocortex (NCX). Advanced search provides lists of the top 10-100 genes enriched in one of the brain regions.

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Reference Database of Immune Cells (RefDIC)

Gene expression profiles at the mRNA and the protein levels of immune cells and tissues

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Single-cell RNA-Seq (scRNA-seq)

The scRNASeqDB database contains 36 human single cell gene expression data sets collected from Gene Expression Omnibus (GEO), involving 8910 cells from 174 cell groups. 

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Broad-Novartis Cancer Cell Line Encyclopedia (CCLE)

Access to genomic data, analysis and visualization for about 1000 cell lines

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cBioPortal for Cancer Genomics

Provides visualization, analysis and download of large-scale cancer genomics data sets

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Lung Gene Expression Analysis (LGEA) web portal

Lung Gene Expression Analysis (LGEA) web portal useful for the analysis, display and interpretation of gene expression patterns obtained from single cells, sorted cell populations and whole lung tissues. (PMID: 28070014)

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Human Protein Atlas

A knowledge-based analysis and entry into the Human Protein Atlas from different defined transections of the human tissue proteome. Data available for download, https://www.proteinatlas.org/about/download

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Inner Ear Transcriptome

Provide gene expression patterns across the human inner ear

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Kidney Interactive Transcriptomics

This tool allows users to query gene expression from mouse or human kidney and human kidney organoid single cell datasets.

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Ocular Tissue Database

Provide gene expression patterns across the human ocular tissue

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RNASeq Blood Brain Barrier

Expression and splicing of ABC and SLC transporters in the human blood-brain barrier measured with RNAseq (PMID: 28188910)

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VastDB

An atlas of alternative splicing profiles in vertebrate cell and tissue types

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Placenta Transcriptome

A database of the human placenta transcriptome (Ref: PMID: 33976128
PMCID)

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Translational Genomics Research Institute

Link to supplementary data published by the Translational Genomics Research Institute, the data mainly include gene expression profiling

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Human_BBB

Single cell RNA seq (human liver)

Single cell RNA sequencing of human liver.

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Brain RNA-Seq


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